INSTALLATION

GAN-MAT was developed on Python 3.9.

Dependencies & Python packages

FSL v.6.0
FreeSurfer v.7.3.2
AFNI v.22.1.14
ANTs v.2.3.5
Workbench v.1.5.0
GNU Parallel
brainspace == 0.1.10
numpy == 1.24.4
scipy == 1.9.3
nibabel == 5.2.0
torch == 2.1.2
tqdm

Installation

1. Download the code from our GitHub page:

git clone https://github.com/CAMIN-neuro/GAN-MAT.git

2. Download the model at the link below:

https://www.dropbox.com/sh/nnzayieuizd012y/AACLSwUY9BBTCdf66_nWqK02a?dl=0

3. Move the downloaded model to the GAN-MAT folder:

mv /DOWNLOAD/DIRECTORY/model.pth /GAN-MAT/DIRECTORY/GAN-MAT/functions/model
# Change  the path to your directories!

4. Set the environment:

export GANMAT=/Your/GAN-MAT/Directory
PATH=${PATH}:${GANMAT}:${GANMAT}/functions
export PATH